Package org.incenp.obofoundry.sssom.owl

Class AnnotatedAxiomGenerator

  • All Implemented Interfaces:
    IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom>
    public class AnnotatedAxiomGenerator
extends Object
implements IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom>
    A class to generated annotated OWL axioms from a mapping. This class uses another mapping transformer to create the initial axiom from the mapping itself, then annotates that axiom with the mapping metadata.

    • Constructor Detail

      • AnnotatedAxiomGenerator

        public AnnotatedAxiomGenerator​(org.semanticweb.owlapi.model.OWLOntology ontology)
        Creates a new instance that generate “direct” OWL axioms with standard annotations from the mapping metadata.
        Parameters:
        ontology - The ontology to generate axioms for.

      • AnnotatedAxiomGenerator

        public AnnotatedAxiomGenerator​(org.semanticweb.owlapi.model.OWLOntology ontology,
                               boolean onlyMetadata)
        Creates a new instance that generates “direct” OWL axioms with standard annotations from either the mapping metadata slots or all the mapping slots.
        Parameters:
        ontology - The ontology to generate axioms for.
        onlyMetadata - If true, only generate annotations from metadata slots (excluding subject_id, predicate_id, and object_id, as well as mapping_cardinality); otherwise, generate annotations from available slots.

      • AnnotatedAxiomGenerator

        public AnnotatedAxiomGenerator​(org.semanticweb.owlapi.model.OWLOntology ontology,
                               Collection<String> slots)
        Creates a new instance that generates “direct” OWL axioms with standard annotations from the specified list of slots.
        Parameters:
        ontology - The ontology to generate axioms for.
        slots - The list of slots from which to derive annotations; if null, all available slots will be used.

      • AnnotatedAxiomGenerator

        public AnnotatedAxiomGenerator​(org.semanticweb.owlapi.model.OWLOntology ontology,
                               IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> innerGenerator,
                               IMetadataTransformer<Mapping,​org.semanticweb.owlapi.model.IRI> slotTranslator)
        Creates a new instance with the specified generator and metadata transformer. Axiom annotations are derived from the mapping metadata slots only.
        Parameters:
        ontology - The ontology to generate axioms for.
        innerGenerator - The mapping transformer to produce the axioms to annotate.
        slotTranslator - The metadata-to-IRI translator indicating the annotation property to use for each slot.

      • AnnotatedAxiomGenerator

        public AnnotatedAxiomGenerator​(org.semanticweb.owlapi.model.OWLOntology ontology,
                               IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> innerGenerator,
                               IMetadataTransformer<Mapping,​org.semanticweb.owlapi.model.IRI> slotTranslator,
                               boolean onlyMetadata)
        Creates a new instance with the specified generator and metadata transformer. Axiom annotations are derived from either the metadata slots only or from all the mapping slots.
        Parameters:
        ontology - The ontology to generate axioms for.
        innerGenerator - The mapping transformer to produce the axioms to annotate.
        slotTranslator - The metadata-to-IRI translator indicating the annotation property to use for each metadata slot.
        onlyMetadata - If true, only generate annotations from metadata slots (excluding subject_id, predicate_id, and object_id, as well as mapping_cardinality); otherwise, generate annotations from available slots.

      • AnnotatedAxiomGenerator

        public AnnotatedAxiomGenerator​(org.semanticweb.owlapi.model.OWLOntology ontology,
                               IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> innerGenerator,
                               IMetadataTransformer<Mapping,​org.semanticweb.owlapi.model.IRI> slotTranslator,
                               Collection<String> slots)
        Creates a new instance with the specified generator and metadata transformer, and a customised list of slots to use to generate the annotations.
        Parameters:
        ontology - The ontology to generate axioms for.
        innerGenerator - The mapping transformer to produce the axioms to annotate.
        slotTranslator - The metadata-to-IRI translator indicating the annotation property to use for each slot.
        slots - The list of slots from which to derive annotations; if null, all available slots will be used.

    • Method Detail

      • transform

        public org.semanticweb.owlapi.model.OWLAxiom transform​(Mapping mapping)
        Description copied from interface: IMappingTransformer
        Transform a mapping into something else.
        Specified by:
        transform in interface IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom>
        Parameters:
        mapping - The mapping to transform.
        Returns:
        The object generated from the mapping.