Uses of Class
org.incenp.obofoundry.sssom.SSSOMFormatException

Packages that use SSSOMFormatException

Package	Description
org.incenp.obofoundry.sssom
org.incenp.obofoundry.sssom.compatibility
org.incenp.obofoundry.sssom.extract
org.incenp.obofoundry.sssom.rdf
org.incenp.obofoundry.sssom.util

Uses of SSSOMFormatException in org.incenp.obofoundry.sssom

Methods in org.incenp.obofoundry.sssom that throw SSSOMFormatException

Modifier and Type	Method	Description
void	Validator.check(MappingSet ms)	Checks whether the given mapping set is valid, and throws an exception if it is not.
Mapping	YAMLConverter.convertMapping(Map<String,Object> rawMap)	Converts a generic dictionary (as may have been obtained from a YAML or JSON parser) into a Mapping object.
Mapping	YAMLConverter.convertMapping(Map<String,Object> rawMap, Version targetVersion)	Converts a generic dictionary (as may have been obtained from a YAML or JSON parser) into a Mapping object.
MappingSet	YAMLConverter.convertMappingSet(Map<String,Object> rawMap)	Converts a generic dictionary (as may have been obtained from a YAML or JSON parser) into a MappingSet object.
void	IYAMLPreprocessor.process(Map<String,Object> rawMap)	Apply a treatment to the specified dictionary.
MappingSet	JSONReader.read()
abstract MappingSet	SSSOMReader.read()	Reads a mapping set from the source file.
MappingSet	TSVReader.read()	Reads a mapping set from the source file(s).
MappingSet	TSVReader.read(boolean metadataOnly)	Reads a mapping set from the source file(s), with the option of reading the metadata only.
protected void	SSSOMReader.validate(MappingSet mappingSet)	Validates a mapping set.

Uses of SSSOMFormatException in org.incenp.obofoundry.sssom.compatibility

Methods in org.incenp.obofoundry.sssom.compatibility that throw SSSOMFormatException

Modifier and Type	Method	Description
void	JsonLDConverter.process(Map<String,Object> rawMap)
void	LiteralProfileConverter.process(Map<String,Object> rawMap)
void	MatchTermTypeConverter.process(Map<String,Object> rawMap)
void	MatchTypeConverter.process(Map<String,Object> rawMap)
void	SemanticSimilarityConverter.process(Map<String,Object> rawMap)

Uses of SSSOMFormatException in org.incenp.obofoundry.sssom.extract

Subclasses of SSSOMFormatException in org.incenp.obofoundry.sssom.extract

Modifier and Type	Class	Description
class	ExtractorSyntaxException	An exception thrown when parsing an invalid “extractor expression”.

Uses of SSSOMFormatException in org.incenp.obofoundry.sssom.rdf

Methods in org.incenp.obofoundry.sssom.rdf that throw SSSOMFormatException

Modifier and Type	Method	Description
MappingSet	RDFConverter.fromRDF(org.eclipse.rdf4j.model.Model model)	Converts a RDF model to a MappingSet object.
Mapping	RDFConverter.mappingFromRDF(org.eclipse.rdf4j.model.Model model)	Converts a RDF model to a Mapping object.
Mapping	RDFConverter.mappingFromRDF(org.eclipse.rdf4j.model.Model model, Version targetVersion)	Converts a RDF model to a Mapping object.
MappingSet	RDFReader.read()

Uses of SSSOMFormatException in org.incenp.obofoundry.sssom.util

Methods in org.incenp.obofoundry.sssom.util that throw SSSOMFormatException

Modifier and Type	Method	Description
SSSOMReader	ReaderFactory.getReader(File file)	Gets a SSSOM reader suitable for the format used in the provided file.
SSSOMReader	ReaderFactory.getReader(InputStream stream)	Gets a SSSOM reader suitable for the format used in the provided stream.
SSSOMReader	ReaderFactory.getReader(Reader reader)	Gets a SSSOM reader suitable for the format used in the provider Reader object.
SSSOMReader	ReaderFactory.getReader(Reader reader, String filename)	Gets a SSSOM reader suitable for the format used in the provided Reader object.
SSSOMReader	ReaderFactory.getReader(String filename)	Gets a SSSOM reader suitable for the format used in the file with the provided name.
SSSOMReader	ReaderFactory.getReader(String filename, boolean allowStdin)	Gets a SSSOM reader suitable for the format used in the file with the provided name.
SSSOMReader	ReaderFactory.getReader(String filename, boolean allowStdin, SerialisationFormat fmt)	Gets a SSSOM reader for the provided file, with a possibly explicitly specified format.
SSSOMReader	ReaderFactory.getReader(String filename, String metaFilename)	Gets a SSSOM reader suitable for the format used in the file with the provided name.
SSSOMReader	ReaderFactory.getReader(String filename, String metaFilename, boolean allowStdin)	Gets a SSSOM reader suitable for the format used in the file with the provided name.
SSSOMReader	ReaderFactory.getReader(String filename, String metaFilename, boolean allowStdin, SerialisationFormat fmt)	Gets a SSSOM reader suitable for the specified file, with a possibly explicitly specified format.