Package org.incenp.obofoundry.sssom

Interface Summary

Interface	Description
IYAMLPreprocessor	An interface for applying arbitrary treatments to a YAML-derived dictionary.

Class Summary

Class	Description
Cardinalizer	A helper object to compute cardinality values.
DefaultMappingComparator	Comparator for mapping objects.
ExtensionSlotManager	A helper class to deal with non-standard metadata slots and their definitions.
JSONReader	A parser to read a SSSOM mapping set from a JSON serialisation format.
JSONWriter	A writer to serialise a SSSOM mapping set into a JSON format.
MappingHasher	Creates deterministic hash values from mappings.
PrefixManager	Helper class to shorten/expand identifiers based on a prefix map.
SetMerger	Helper object to merge one mapping set into another.
SSSOMReader	Base class to read a mapping set from any of the supported serialisation formats.
SSSOMUtils	Helper methods for SSSOM.
SSSOMWriter	Base class to serialise a mapping set.
TSVReader	A parser to read a SSSOM mapping set from the TSV serialisation format.
TSVWriter	A writer to serialise a SSSOM mapping set into the TSV format.
Validator	Helper class to validate MappingSet and Mapping objects.
VersionComplianceVisitor<T>	Helper visitor to determine the minimum version of the SSSOM specification is required by a mapping or a mapping set.
VersionEnforcerVisitor<T>	Helper object to forcibly remove from a set or a mapping all slots or slot values that are incompatible with a given version of the SSSOM specification.
YAMLConverter	A helper class to convert generic YAML dictionaries into SSSOM objects.

Enum Summary

Enum	Description
ExtraMetadataPolicy	Represents the behaviour to adopt regarding non-standard metadata slots.
HashType	The type of hash that the MappingHasher class should produce.
MergeOption	Represents various possible behaviours when merging a mapping set into another.
PropagationPolicy	The policy that defines how to propagate values between the mapping set level and the level of individual mappings.
TSVReader.SeparatorMode	Defines what separator character the reader should expect when parsing the TSV section.
ValidationError	Represents all the post-parsing errors that can make a mapping set invalid.
ValidationLevel	Represents different levels of strictness when validating a mapping set.

Exception Summary

Exception	Description
SSSOMFormatException	This exception is thrown when processing data that do not conform to the SSSOM format specification.