Package org.incenp.obofoundry.sssom.owl

Class AnnotationVisitor<T>

java.lang.Object

org.incenp.obofoundry.sssom.owl.AnnotationVisitor<T>

All Implemented Interfaces:

ISlotVisitor<T>

public class AnnotationVisitor<T>
extends Object
implements ISlotVisitor<T>

A mapping slots visitor that converts mapping metadata to OWL annotations.

Method Summary

Modifier and Type	Method	Description
org.semanticweb.owlapi.model.OWLAxiom	annotate(org.semanticweb.owlapi.model.OWLAxiom axiom)	Annotates an axiom with the annotations generated from the visited slots.
void	annotate(org.semanticweb.owlapi.model.OWLOntology ontology)	Annotates an ontology with the annotations generated from the visited slots.
void	renderURISlotsAsResources(boolean value)	Specifies whether URI-typed slots (e.g., sssom:license) should be rendered as IRI-identified resources rather than as xsd:anyURI literals.
void	visit(CurieMapSlot<T> slot, T object, Map<String,String> value)	Visits a slot that holds a curie map.
void	visit(DateSlot<T> slot, T object, LocalDate value)	Visits a date-typed slot.
void	visit(DoubleSlot<T> slot, T object, Double value)	Visits a double-typed slot.
void	visit(EntityReferenceSlot<T> slot, T object, String value)	Visits a slot that holds an entity reference.
void	visit(EntityReferenceSlot<T> slot, T object, List<String> values)	Visits a multi-valued slot that holds entity references.
void	visit(EntityTypeSlot<T> slot, T object, EntityType value)	Visits a slot that holds an entity type enumeration value.
void	visit(ExtensionDefinitionSlot<T> slot, T object, List<ExtensionDefinition> values)	Visits a slot that holds a list of extension definitions for non-standard metadata.
void	visit(ExtensionSlot<T> slot, T object, Map<String,ExtensionValue> values)	Visits a slot that holds extension values (non-standard metadata).
void	visit(MappingCardinalitySlot<T> slot, T object, MappingCardinality value)	Visits a slot that holds a mapping cardinality enumeration value.
void	visit(PredicateModifierSlot<T> slot, T object, PredicateModifier value)	Visits a slot that holds a predicate modifier enumeration value.
void	visit(Slot<T> slot, T mapping, Object value)	Visits a generic slot.
void	visit(StringSlot<T> slot, T object, String value)	Visits a string-typed slot.
void	visit(StringSlot<T> slot, T object, List<String> values)	Visits a multi-valued string-typed slot.
void	visit(URISlot<T> slot, T object, String value)	Visits a URI-typed slot.
void	visit(URISlot<T> slot, T object, List<String> values)	Visits a multi-valued URI-typed slot.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.incenp.obofoundry.sssom.slots.ISlotVisitor

visit

Method Detail

renderURISlotsAsResources

public void renderURISlotsAsResources(boolean value)

Specifies whether URI-typed slots (e.g., sssom:license) should be rendered as IRI-identified resources rather than as xsd:anyURI literals.

URI-typed slots are rendered as resources in the RDF serialisation, so it seems logical that they should be rendered similarly in the OWL serialisation. But that has not been decided yet, so for now we support both.

Parameters:

value - If true, URI-typed slots are rendered as IRIs.

annotate

public org.semanticweb.owlapi.model.OWLAxiom annotate(org.semanticweb.owlapi.model.OWLAxiom axiom)

Annotates an axiom with the annotations generated from the visited slots.

Parameters:

axiom - The axiom to annotate.

Returns:

The annotated axiom.

annotate

public void annotate(org.semanticweb.owlapi.model.OWLOntology ontology)

Annotates an ontology with the annotations generated from the visited slots.

Parameters:

ontology - The ontology to annotate.

visit

public void visit(StringSlot<T> slot,
                  T object,
                  String value)

Description copied from interface: ISlotVisitor

Visits a string-typed slot.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(StringSlot<T> slot,
                  T object,
                  List<String> values)

Description copied from interface: ISlotVisitor

Visits a multi-valued string-typed slot.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

values - The values of the slot.

visit

public void visit(URISlot<T> slot,
                  T object,
                  String value)

Description copied from interface: ISlotVisitor

Visits a URI-typed slot.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(URISlot<T> slot,
                  T object,
                  List<String> values)

Description copied from interface: ISlotVisitor

Visits a multi-valued URI-typed slot.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

values - The values of the slot.

visit

public void visit(EntityReferenceSlot<T> slot,
                  T object,
                  String value)

Description copied from interface: ISlotVisitor

Visits a slot that holds an entity reference.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(EntityReferenceSlot<T> slot,
                  T object,
                  List<String> values)

Description copied from interface: ISlotVisitor

Visits a multi-valued slot that holds entity references.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

values - The values of the slot.

visit

public void visit(DoubleSlot<T> slot,
                  T object,
                  Double value)

Description copied from interface: ISlotVisitor

Visits a double-typed slot.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(DateSlot<T> slot,
                  T object,
                  LocalDate value)

Description copied from interface: ISlotVisitor

Visits a date-typed slot.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(Slot<T> slot,
                  T mapping,
                  Object value)

Description copied from interface: ISlotVisitor

Visits a generic slot.

This method is normally not used as all slots in a SSSOM object have more precise types. But it can be used to implement behaviours that should be common to several slot types.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

mapping - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(ExtensionSlot<T> slot,
                  T object,
                  Map<String,ExtensionValue> values)

Description copied from interface: ISlotVisitor

Visits a slot that holds extension values (non-standard metadata).

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

values - The values of the slot.

visit

public void visit(EntityTypeSlot<T> slot,
                  T object,
                  EntityType value)

Description copied from interface: ISlotVisitor

Visits a slot that holds an entity type enumeration value.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(MappingCardinalitySlot<T> slot,
                  T object,
                  MappingCardinality value)

Description copied from interface: ISlotVisitor

Visits a slot that holds a mapping cardinality enumeration value.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(PredicateModifierSlot<T> slot,
                  T object,
                  PredicateModifier value)

Description copied from interface: ISlotVisitor

Visits a slot that holds a predicate modifier enumeration value.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(CurieMapSlot<T> slot,
                  T object,
                  Map<String,String> value)

Description copied from interface: ISlotVisitor

Visits a slot that holds a curie map.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

value - The value of the slot.

visit

public void visit(ExtensionDefinitionSlot<T> slot,
                  T object,
                  List<ExtensionDefinition> values)

Description copied from interface: ISlotVisitor

Visits a slot that holds a list of extension definitions for non-standard metadata.

Specified by:

visit in interface ISlotVisitor<T>

Parameters:

slot - The slot that is being visited.

object - The object to which the slot is attached.

values - The values of the slot.