Hierarchy For All Packages

Package Hierarchies:

• org.incenp.obofoundry.sssom,
• org.incenp.obofoundry.sssom.checks,
• org.incenp.obofoundry.sssom.compatibility,
• org.incenp.obofoundry.sssom.extract,
• org.incenp.obofoundry.sssom.model,
• org.incenp.obofoundry.sssom.owl,
• org.incenp.obofoundry.sssom.rdf,
• org.incenp.obofoundry.sssom.slots,
• org.incenp.obofoundry.sssom.transform,
• org.incenp.obofoundry.sssom.uriexpr,
• org.incenp.obofoundry.sssom.util

Class Hierarchy

• java.lang.Object
  • org.incenp.obofoundry.sssom.owl.AnnotatedAxiomGenerator (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>)
  • org.incenp.obofoundry.sssom.owl.AnnotationAxiomGenerator (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>)
  • org.incenp.obofoundry.sssom.owl.AnnotationVisitor<T> (implements org.incenp.obofoundry.sssom.slots.ISlotVisitor<T>)
  • org.incenp.obofoundry.sssom.transform.BaseStringModifierFunction (implements org.incenp.obofoundry.sssom.transform.IFormatModifierFunction)
    • org.incenp.obofoundry.sssom.transform.SimpleStringModifierFunction
    • org.incenp.obofoundry.sssom.transform.SSSOMTFormatFunction
    • org.incenp.obofoundry.sssom.transform.SSSOMTPrefixFunction
    • org.incenp.obofoundry.sssom.transform.SSSOMTReplaceModifierFunction
    • org.incenp.obofoundry.sssom.transform.SSSOMTShortFunction
    • org.incenp.obofoundry.sssom.transform.SSSOMTSuffixFunction
  • org.incenp.obofoundry.sssom.Cardinalizer
  • org.incenp.obofoundry.sssom.util.ConfidenceHelper
  • org.incenp.obofoundry.sssom.model.Constants
  • org.incenp.obofoundry.sssom.rdf.Constants
  • org.incenp.obofoundry.sssom.DefaultMappingComparator (implements java.util.Comparator<T>)
  • org.incenp.obofoundry.sssom.owl.DirectAxiomGenerator (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>)
  • org.incenp.obofoundry.sssom.owl.DirectMetadataTransformer<T> (implements org.incenp.obofoundry.sssom.transform.IMetadataTransformer<T,V>)
  • org.incenp.obofoundry.sssom.checks.DuplicatedRecordIdValidator (implements org.incenp.obofoundry.sssom.checks.IMappingSetValidator, org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.owl.EditableEntityChecker (implements org.semanticweb.owlapi.expression.OWLEntityChecker, org.semanticweb.owlapi.model.OWLEntityVisitor)
  • org.incenp.obofoundry.sssom.owl.EquivalentAxiomGenerator (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>)
  • org.incenp.obofoundry.sssom.util.ExtendedPrefixMap
  • org.incenp.obofoundry.sssom.model.ExtensionDefinition
  • org.incenp.obofoundry.sssom.util.ExtensionSlotHelper
  • org.incenp.obofoundry.sssom.ExtensionSlotManager
  • org.incenp.obofoundry.sssom.model.ExtensionValue
  • org.incenp.obofoundry.sssom.transform.FilterSet (implements org.incenp.obofoundry.sssom.transform.IMappingFilter)
  • org.incenp.obofoundry.sssom.compatibility.JsonLDConverter (implements org.incenp.obofoundry.sssom.IYAMLPreprocessor)
  • org.incenp.obofoundry.sssom.compatibility.LiteralProfileConverter (implements org.incenp.obofoundry.sssom.IYAMLPreprocessor)
  • org.incenp.obofoundry.sssom.model.Mapping
  • org.incenp.obofoundry.sssom.model.Mapping.MappingBuilder
  • org.incenp.obofoundry.sssom.transform.MappingEditor (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>, org.incenp.obofoundry.sssom.slots.ISimpleSlotVisitor<T,V>)
  • org.incenp.obofoundry.sssom.transform.MappingFormatter
  • org.incenp.obofoundry.sssom.MappingHasher
  • org.incenp.obofoundry.sssom.transform.MappingProcessingRule<T>
  • org.incenp.obofoundry.sssom.transform.MappingProcessor<T>
    • org.incenp.obofoundry.sssom.owl.OWLGenerator
  • org.incenp.obofoundry.sssom.model.MappingRegistry
  • org.incenp.obofoundry.sssom.model.MappingRegistry.MappingRegistryBuilder
  • org.incenp.obofoundry.sssom.model.MappingSet
  • org.incenp.obofoundry.sssom.model.MappingSet.MappingSetBuilder
  • org.incenp.obofoundry.sssom.extract.MappingSetExtensionExtractor (implements org.incenp.obofoundry.sssom.extract.IValueExtractor)
  • org.incenp.obofoundry.sssom.model.MappingSetReference
  • org.incenp.obofoundry.sssom.model.MappingSetReference.MappingSetReferenceBuilder
  • org.incenp.obofoundry.sssom.extract.MappingSetSlotExtractor (implements org.incenp.obofoundry.sssom.extract.IValueExtractor)
  • org.incenp.obofoundry.sssom.extract.MappingValueExtractor (implements org.incenp.obofoundry.sssom.extract.IValueExtractor)
    • org.incenp.obofoundry.sssom.extract.HashExtractor
    • org.incenp.obofoundry.sssom.extract.MappingExtensionExtractor
    • org.incenp.obofoundry.sssom.extract.MappingSlotExtractor
    • org.incenp.obofoundry.sssom.extract.SExpressionExtractor
  • org.incenp.obofoundry.sssom.compatibility.MatchTermTypeConverter (implements org.incenp.obofoundry.sssom.IYAMLPreprocessor)
  • org.incenp.obofoundry.sssom.compatibility.MatchTypeConverter (implements org.incenp.obofoundry.sssom.IYAMLPreprocessor)
  • org.incenp.obofoundry.sssom.checks.MissingJustificationValidator (implements org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.checks.MissingLicenseValidator (implements org.incenp.obofoundry.sssom.checks.IMappingSetValidator)
  • org.incenp.obofoundry.sssom.checks.MissingObjectValidator (implements org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.checks.MissingPredicateValidator (implements org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.checks.MissingRecordIdValidator (implements org.incenp.obofoundry.sssom.checks.IMappingSetValidator, org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.checks.MissingReviewerValidator (implements org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.checks.MissingSetIdValidator (implements org.incenp.obofoundry.sssom.checks.IMappingSetValidator)
  • org.incenp.obofoundry.sssom.checks.MissingSubjectValidator (implements org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.transform.NamedFilter (implements org.incenp.obofoundry.sssom.transform.IMappingFilter)
  • org.incenp.obofoundry.sssom.transform.NamedMappingProcessorCallback (implements org.incenp.obofoundry.sssom.transform.IMappingProcessorCallback)
  • org.incenp.obofoundry.sssom.transform.NamedMappingTransformer<T> (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>)
  • org.incenp.obofoundry.sssom.owl.OWLHelper
  • org.incenp.obofoundry.sssom.checks.PredicateTypeValidator (implements org.incenp.obofoundry.sssom.checks.IMappingValidator)
  • org.incenp.obofoundry.sssom.PrefixManager
  • org.incenp.obofoundry.sssom.rdf.RDFConverter
  • org.incenp.obofoundry.sssom.util.ReaderFactory
  • org.incenp.obofoundry.sssom.checks.RedefinedBuiltinPrefixValidator (implements org.incenp.obofoundry.sssom.checks.IMappingSetValidator)
  • org.incenp.obofoundry.sssom.compatibility.SemanticSimilarityConverter (implements org.incenp.obofoundry.sssom.IYAMLPreprocessor)
  • org.incenp.obofoundry.sssom.slots.Slot<T>
    • org.incenp.obofoundry.sssom.slots.CurieMapSlot<T>
    • org.incenp.obofoundry.sssom.slots.DateSlot<T>
    • org.incenp.obofoundry.sssom.slots.DoubleSlot<T>
    • org.incenp.obofoundry.sssom.slots.EntityTypeSlot<T>
    • org.incenp.obofoundry.sssom.slots.ExtensionDefinitionSlot<T>
    • org.incenp.obofoundry.sssom.slots.ExtensionSlot<T>
    • org.incenp.obofoundry.sssom.slots.MappingCardinalitySlot<T>
    • org.incenp.obofoundry.sssom.slots.PredicateModifierSlot<T>
    • org.incenp.obofoundry.sssom.slots.StringSlot<T>
      • org.incenp.obofoundry.sssom.slots.EntityReferenceSlot<T>
      • org.incenp.obofoundry.sssom.slots.URISlot<T>
    • org.incenp.obofoundry.sssom.slots.VersionSlot<T>
  • org.incenp.obofoundry.sssom.slots.SlotHelper<T>
  • org.incenp.obofoundry.sssom.slots.SlotPropagator
  • org.incenp.obofoundry.sssom.slots.SlotVisitorBase<T> (implements org.incenp.obofoundry.sssom.slots.ISlotVisitor<T>)
    • org.incenp.obofoundry.sssom.SetMerger
    • org.incenp.obofoundry.sssom.extract.SlotExtractor<T>
    • org.incenp.obofoundry.sssom.VersionComplianceVisitor<T>
    • org.incenp.obofoundry.sssom.VersionEnforcerVisitor<T>
  • org.incenp.obofoundry.sssom.SSSOMReader
    • org.incenp.obofoundry.sssom.JSONReader
    • org.incenp.obofoundry.sssom.rdf.RDFReader
    • org.incenp.obofoundry.sssom.TSVReader
  • org.incenp.obofoundry.sssom.owl.SSSOMTAnnotateFunction (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTAssignFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTConfidenceFilterFunction (implements org.incenp.obofoundry.sssom.transform.IMappingFilter, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.owl.SSSOMTCreateAxiomFunction (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.owl.SSSOMTDeclareFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTDefaultModifierFunction (implements org.incenp.obofoundry.sssom.transform.IFormatModifierFunction)
  • org.incenp.obofoundry.sssom.owl.SSSOMTDirectFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTDuplicateFunction (implements org.incenp.obofoundry.sssom.transform.IMappingFilter, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.owl.SSSOMTExistsFunction (implements org.incenp.obofoundry.sssom.transform.IMappingFilter, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTFlattenFunction (implements org.incenp.obofoundry.sssom.transform.IFormatModifierFunction)
  • org.incenp.obofoundry.sssom.transform.SSSOMTHasExtensionFunction (implements org.incenp.obofoundry.sssom.transform.IMappingFilter, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.owl.SSSOMTHelper
  • org.incenp.obofoundry.sssom.transform.SSSOMTInferCardinalityFunction (implements org.incenp.obofoundry.sssom.transform.IMappingProcessorCallback, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTInvertFunction (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.owl.SSSOMTIsAFunction (implements org.incenp.obofoundry.sssom.transform.IMappingFilter, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTListItemFunction (implements org.incenp.obofoundry.sssom.transform.IFormatModifierFunction)
  • org.incenp.obofoundry.sssom.transform.SSSOMTransformApplication<T> (implements org.incenp.obofoundry.sssom.transform.ISSSOMTransformApplication<T>)
    • org.incenp.obofoundry.sssom.owl.SSSOMTOwlApplication
  • org.incenp.obofoundry.sssom.transform.SSSOMTransformReader<T>
  • org.incenp.obofoundry.sssom.transform.SSSOMTReplaceFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTSetvarCallbackFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTSetvarFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.transform.SSSOMTStopFunction (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.uriexpr.SSSOMTUriExpressionContainsFunction<T> (implements org.incenp.obofoundry.sssom.transform.IMappingFilter, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.uriexpr.SSSOMTUriExpressionDeclareFormatFunction (implements org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.uriexpr.SSSOMTUriExpressionExpandFunction (implements org.incenp.obofoundry.sssom.transform.IFormatModifierFunction)
  • org.incenp.obofoundry.sssom.uriexpr.SSSOMTUriExpressionSlotValueFunction (implements org.incenp.obofoundry.sssom.transform.IFormatModifierFunction)
  • org.incenp.obofoundry.sssom.uriexpr.SSSOMTUriExpressionToExtFunction<T> (implements org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>, org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>)
  • org.incenp.obofoundry.sssom.SSSOMUtils
  • org.incenp.obofoundry.sssom.SSSOMWriter
    • org.incenp.obofoundry.sssom.JSONWriter
    • org.incenp.obofoundry.sssom.rdf.RDFWriter
    • org.incenp.obofoundry.sssom.TSVWriter
  • org.incenp.obofoundry.sssom.owl.StandardMapMetadataTransformer<T> (implements org.incenp.obofoundry.sssom.transform.IMetadataTransformer<T,V>)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.incenp.obofoundry.sssom.SSSOMFormatException
        • org.incenp.obofoundry.sssom.extract.ExtractorSyntaxException
      • org.incenp.obofoundry.sssom.transform.SSSOMTransformError
  • org.incenp.obofoundry.sssom.uriexpr.UriExpression
  • org.incenp.obofoundry.sssom.uriexpr.UriExpressionRegistry
  • org.incenp.obofoundry.sssom.Validator
  • org.incenp.obofoundry.sssom.extract.ValueExtractorFactory
  • org.incenp.obofoundry.sssom.transform.VariableManager
  • org.incenp.obofoundry.sssom.owl.XrefExtractor
  • org.incenp.obofoundry.sssom.YAMLConverter

Interface Hierarchy

• org.incenp.obofoundry.sssom.transform.IFormatModifierFunction
• org.incenp.obofoundry.sssom.transform.IMappingFilter
• org.incenp.obofoundry.sssom.transform.IMappingProcessorCallback
• org.incenp.obofoundry.sssom.transform.IMappingProcessorListener<T>
• org.incenp.obofoundry.sssom.checks.IMappingSetValidator
• org.incenp.obofoundry.sssom.transform.IMappingTransformer<T>
• org.incenp.obofoundry.sssom.checks.IMappingValidator
• org.incenp.obofoundry.sssom.transform.IMetadataTransformer<T,V>
• org.incenp.obofoundry.sssom.slots.ISimpleSlotVisitor<T,V>
• org.incenp.obofoundry.sssom.slots.ISlotVisitor<T>
• org.incenp.obofoundry.sssom.transform.ISSSOMTFunction<T>
• org.incenp.obofoundry.sssom.transform.ISSSOMTransformApplication<T>
• org.incenp.obofoundry.sssom.extract.IValueExtractor
• org.incenp.obofoundry.sssom.IYAMLPreprocessor

Annotation Type Hierarchy

• org.incenp.obofoundry.sssom.model.EntityReference (implements java.lang.annotation.Annotation)
• org.incenp.obofoundry.sssom.model.Propagatable (implements java.lang.annotation.Annotation)
• org.incenp.obofoundry.sssom.model.SlotURI (implements java.lang.annotation.Annotation)
• org.incenp.obofoundry.sssom.model.URI (implements java.lang.annotation.Annotation)
• org.incenp.obofoundry.sssom.model.Versionable (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.incenp.obofoundry.sssom.model.BuiltinPrefix
    • org.incenp.obofoundry.sssom.model.CommonPredicate
    • org.incenp.obofoundry.sssom.model.EntityType
    • org.incenp.obofoundry.sssom.ExtraMetadataPolicy
    • org.incenp.obofoundry.sssom.HashType
    • org.incenp.obofoundry.sssom.model.MappingCardinality
    • org.incenp.obofoundry.sssom.MergeOption
    • org.incenp.obofoundry.sssom.owl.OWLHelper.UpdateMode
    • org.incenp.obofoundry.sssom.model.PredicateModifier
    • org.incenp.obofoundry.sssom.PropagationPolicy
    • org.incenp.obofoundry.sssom.util.SerialisationFormat
    • org.incenp.obofoundry.sssom.TSVReader.SeparatorMode
    • org.incenp.obofoundry.sssom.ValidationError
    • org.incenp.obofoundry.sssom.ValidationLevel
    • org.incenp.obofoundry.sssom.model.ValueType
    • org.incenp.obofoundry.sssom.model.Version